StarBase (biological database)

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This article is about the biological database. For the office database software, see StarOffice.
StarBase
File:Database.png
Content
DescriptionmicroRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data.
Contact
Research centerSun Yat-sen University
LaboratoryKey Laboratory of Gene Engineering of the Ministry of Education
AuthorsJian-Hua Yang
Primary citationYang & al. (2011)[1]
Release date2010
Access
Websitehttp://starbase.sysu.edu.cn/

StarBase[2] is a database for decoding miRNA-mRNA, miRNA-lncRNA,[3] miRNA-sncRNA, miRNA-circRNA,[3] miRNA-pseudogene, protein-lncRNA,[4] protein-ncRNA, protein-mRNA interactions, and ceRNA networks[5] from CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) and degradome sequencing data.[1][6] StarBase provides miRFunction and ceRNAFunction web tools to predict the function of ncRNAs (miRNAs, lncRNAs, pseudogenes) and protein-coding genes from the miRNA and ceRNA[7] regulatory networks. StarBase also developed Pan-Cancer Analysis Platform to decipher Pan-Cancer Analysis Networks of lncRNAs, miRNAs, ceRNAs, and RNA-binding proteins (RBPs) by mining clinical and expression profiles of 14 cancer types (including more than six thousand samples) from The Cancer Genome Atlas (TCGA) Data Portal.

See also

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References

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