PathoPhenoDB
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PathoPhenoDB is a biological database.[1] The database connects pathogens to their phenotypes using multiple databases such as NCBI, Human Disease Ontology[2] Human Phenotype Ontology,[3] Mammalian Phenotype Ontology,[4] PubChem, SIDER[5] and CARD.[6] Pathogen-disease associations were gathered mainly through the CDC and the List of Infectious Diseases page on Wikipedia. The manner by which they assigned taxonomy was semi-automatic. When mapped against NCBI Taxonomy, if the pathogen was not an exact match, it was then mapped to the parent class. PathoPhenoDB employs NPMI[7] in order to filter pairs based on their co-occurrence statistics.
See also
[edit | edit source]References
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