FTHFS RNA motif
| FTHFS | |
|---|---|
 Consensus secondary structure and sequence conservation of FTHFS RNA | |
| Identifiers | |
| Symbol | FTHFS |
| Rfam | RF02981 |
| Other data | |
| RNA type | Cis-reg |
| SO | SO:0005836 |
| PDB structures | PDBe |
The FTHFS RNA motif is a conserved RNA structure that was discovered by bioinformatics.[1] FTHFS motifs are found in metagenomic sequences derived from samples of the human gut.
FTHFS motif RNAs likely function as cis-regulatory elements, in view of their positions upstream of protein-coding genes. FTHFS RNAs are consistently located upstream of genes encoding formate-tetrahydrofolate ligase, which produces 10-formyltetrahydrofolate. Such genes are also very commonly regulated by the previously established ZMP/ZTP riboswitch. These ZMP/ZTP-sensing riboswitches detect a shortage of formyltetrahydrofolate by measuring the levels of ZMP and or its triphosphorylated form ZTP; because formyltetrahydrofolate is heavily used in the de novo purine synthesis pathway, formyltetrahydrofolate starvation leads to a buildup of the purine intermediate ZMP, or the result of its triphosphorylation, ZTP. It was, however, noted[1] that the secondary structure of the FTHFS motif is simpler than many riboswitches, and it is less clear if this motif represents a promising riboswitch candidate.