AMAP
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| AMAP | |
|---|---|
| Developers | Ariel Schwartz (UC Berkeley), Lior Pachter (UC Berkeley) |
| Stable release | 2.0
|
| Repository |
|
| Engine | |
| Operating system | UNIX, Linux, Mac |
| Type | Bioinformatics tool |
| Licence | Open source |
| Website | AMAP download |
AMAP is a multiple sequence alignment program based on sequence annealing.[1] This approach consists of building up the multiple alignment one match at a time, thereby circumventing many of the problems of progressive alignment. The AMAP parameters can be used to tune the sensitivity-specificity tradeoff.
The program can be used through the AMAP web server or as a standalone program which can be installed with the source code.
Input/Output
[edit | edit source]This program accepts sequences in FASTA format.
The output format includes: FASTA format, Clustal.
References
[edit | edit source]- ^ Lua error in Module:Citation/CS1/Configuration at line 2172: attempt to index field '?' (a nil value).