File:OME-Zarr format for High Content Screening (HCS).webp

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Summary

Description
English: A description of how the OME-Zarr data format represents data about high-content screens.

a) The organization of data in a .zarr file describing a High Content Screening experiment. Each plate read in the microscope contains multiple wells. To scan each well, multiple images (fields) are necessary. The experiments may contain multiple time points (t), imaging channels (c; e.g. for different fluorescent probes), and be three-dimensional in space (z,y,x). Images may be saved in resolution pyramids, enabling better performance of visualization tools.

b) A view of different scales of the image saved in OME-Zarr format.

Figure 2 of OME-Zarr: a cloud-optimized bioimaging file format with international community support (https://doi.org/10.1038/s43018-020-0026-6)
Date
Source https://link.springer.com/article/10.1007/s00418-023-02209-1 (https://doi.org/10.1007/s00418-023-02209-1)
Author Josh Moore et al.

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Captions

A description of how the OME-Zarr file format represents data about high-content screens.

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10 July 2023

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current12:11, 22 September 2025No thumbnail2,030 × 1,188 (195 KB)wikimediacommons>TiagoLubianaUploaded a work by Josh Moore et al. from https://link.springer.com/article/10.1007/s00418-023-02209-1 (https://doi.org/10.1007/s00418-023-02209-1) with UploadWizard