Archaeopteryx (software)

Archaeopteryx
Archaeopteryx
Developer	Christian M. Zmasek
Stable release	0.972+ beta 9M / 2012.08.08
Repository	{{URL\|example.com\|optional display text}}Lua error in Module:EditAtWikidata at line 29: attempt to index field 'wikibase' (a nil value).;
Engine	Lua error in Module:EditAtWikidata at line 29: attempt to index field 'wikibase' (a nil value).
Operating system	Windows, Linux, Mac OS X
Type	Bioinformatics, phylogenomics
License	LGPL
Website	sites.google.com/site/cmzmasek/home/software/archaeopteryx[dead link]

Archaeopteryx is an interactive computer software program, written in Java, for viewing, editing, and analyzing phylogenetic trees. This type of program can be used for a variety of analyses of molecular data sets, but is particularly designed for phylogenomics. Besides tree description formats with limited expressiveness (such as Newick/New Hamphshire, Nexus), it also implements the phyloXML^[1] format. Archaeopteryx is the successor to Java program A Tree Viewer (ATV).^[2]

References

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External links

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v t e Genomics
Fields	Cognitive genomics Computational genomics Comparative genomics Functional genomics Genome project Human Genome Project Metagenomics Human Microbiome Project Oncogenomics Pangenomics Personal genomics Population genomics Sociogenomics Structural genomics
Bioinformatics	Biochip Cheminformatics Chemogenomics Connectomics Human Connectome Project Epigenomics Human Epigenome Project Glycomics Immunomics Lipidomics Metabolomics Human Metabolome Database Microbiomics Nutrigenomics Paleopolyploidy Pharmacogenetics Pharmacogenomics Systems biology Toxicogenomics Transcriptomics
Structural biology	Proteomics Human proteome project Call-map proteomics Structure-based drug design Expression proteomics
Research tools	2-D electrophoresis Mass spectrometer Electrospray ionization Matrix-assisted laser desorption ionization Matrix-assisted laser desorption ionization-time of flight mass spectrometer Microfluidic-based tools Isotope affinity tags Chromosome conformation capture
Organizations	DNA Data Bank of Japan (JP) European Molecular Biology Laboratory (EU) National Institutes of Health (USA) Wellcome Sanger Institute (UK)
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Archaeopteryx (software)

References

External links

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